What is PCoM?
Protein Co-Migration Database for photosynthetic organisms (PCoM) is a powerful tool for predicting the protein complexes in photosynthetic organisms containing your protein of interest. PCoM stores the data obtained by LC-MS/MS analysis of the protein complexes which were separated by BN-PAGE and extracted from BN-PAGE gel slices.
For further information, take a look at the overview page.
Which proteins can be searched ?
At present, PCoM stores the following data for the protein complexes.
| Organism | Sample | Identified number | Original Data |
|---|---|---|---|
| Arabidopsis thaliana | chloroplast | 804 proteins | Takabayashi et al. (2016) |
| chloroplast 2 | 859 proteins | Takabayashi et al. (2017) | |
| envelope | 309 proteins | Takabayashi et al. (2017) | |
| stroma | 452 proteins | Takabayashi et al. (2016) | |
| thylakoid | 244 proteins | Takabayashi et al. (2013) | |
| mitochondria | 1,264 proteins | Takabayashi et al. (2017) | |
| Physcomitrella patens | whole cells | 1,663 proteins (detection rate::4.32％) |
Takabayashi et al. (2016) |
| Chlamydomonas reinhardtii | whole cells | 1,115 proteins (detection rate:5.69％) |
Takabayashi et al. (2017) |
| Synechosystis sp. PCC6803 | whole cells | 1,458 proteins (detection rate:39.14％) |
Takabayashi et al. (2013) |
| Thermosynechococcus elongatus BP-1 | whole cells | 1,001 proteins (detection rate:40.82％) |
Takabayashi et al. (2017) |
| Prochlorococcus marinus CCMP1986 | whole cells | 761 proteins (detection rate:43.34％) |
Takabayashi et al. (2017) |
| Prochlorococcus marinus CCMP1375 | whole cells | 891 proteins (detection rate:46.21％) |
Takabayashi et al. (2017) |
| Prochlorococcus marinus CCMP2773 | whole cells | 892 proteins (detection rate:38.35％) |
Takabayashi et al. (2017) |
Contact us
Takabayashi@pop.lowtem.hokudai.ac.jp
